BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution

DC FieldValueLanguage
dc.contributor.authorKiefer, Markus
dc.contributor.authorSchmickl, Roswitha
dc.contributor.authorGerman, Dmitry A.
dc.contributor.authorMandakova, Terezie
dc.contributor.authorLysak, Martin A.
dc.contributor.authorAl-Shehbaz, Ihsan A.
dc.contributor.authorFranzke, Andreas
dc.contributor.authorMummenhoff, Klaus
dc.contributor.authorStamatakis, Alexandros
dc.contributor.authorKoch, Marcus A.
dc.date.accessioned2021-12-23T16:22:15Z-
dc.date.available2021-12-23T16:22:15Z-
dc.date.issued2014
dc.identifier.issn00320781
dc.identifier.urihttps://osnascholar.ub.uni-osnabrueck.de/handle/unios/14228-
dc.description.abstractThe Brassicaceae family (mustards or crucifers) includes Arabidopsis thaliana as one of the most important model species in plant biology and a number of important crop plants such as the various Brassica species (e.g. cabbage, canola and mustard). Moreover, the family comprises an increasing number of species that serve as study systems in many fields of plant science and evolutionary research. However, the systematics and taxonomy of the family are very complex and access to scientifically valuable and reliable information linked to species and genus names and its interpretation are often difficult. BrassiBase is a continuously developing and growing knowledge database (http://brassibase.cos.uni-heidelberg.de) that aims at providing direct access to many different types of information ranging from taxonomy and systematics to phylo- and cytogenetics. Providing critically revised key information, the database intends to optimize comparative evolutionary research in this family and supports the introduction of the Brassicaceae as the model family for evolutionary biology and plant sciences. Some features that should help to accomplish these goals within a comprehensive taxonomic framework have now been implemented in the new version 1.1.9. A `Phylogenetic Placement Tool' should help to identify critical accessions and germplasm and provide a first visualization of phylogenetic relationships. The `Cytogenetics Tool' provides in-depth information on genome sizes, chromosome numbers and polyploidy, and sets this information into a Brassicaceae-wide context.
dc.description.sponsorshipGerman Research Foundation (Deutsche Forschungsgemeinschaft, DFG)German Research Foundation (DFG) [KO2302-13/1, DFG-SSP 1529]; This work was supported by the German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) [grant KO2302-13/1 within the framework of the priority research programme `Adaptomics' (http://adaptomics.org/) (DFG-SSP 1529) to M.A.K. and K.M. and providing resources to develop the BrassiBase database system].
dc.language.isoen
dc.publisherOXFORD UNIV PRESS
dc.relation.ispartofPLANT AND CELL PHYSIOLOGY
dc.subjectACCURACY
dc.subjectBIOLOGY
dc.subjectBrassiBase
dc.subjectBrassicaceae
dc.subjectCell Biology
dc.subjectEvolution
dc.subjectKnowledge database
dc.subjectMULTIPLE SEQUENCE ALIGNMENT
dc.subjectPERFORMANCE
dc.subjectPlant Sciences
dc.subjectSYSTEMATICS
dc.titleBrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution
dc.typejournal article
dc.identifier.doi10.1093/pcp/pct158
dc.identifier.isiISI:000330448900003
dc.description.volume55
dc.description.issue1
dc.contributor.orcid0000-0002-0632-5143
dc.contributor.orcid0000-0003-0318-4194
dc.contributor.orcid0000-0003-0353-0691
dc.contributor.orcid0000-0001-7951-1644
dc.contributor.orcid0000-0002-1693-6829
dc.contributor.orcid0000-0002-8449-1593
dc.contributor.orcid0000-0001-6485-0563
dc.contributor.orcid0000-0002-0463-8437
dc.contributor.researcheridE-1365-2012
dc.contributor.researcheridH-1624-2014
dc.contributor.researcheridD-7177-2012
dc.contributor.researcheridB-8740-2009
dc.contributor.researcheridD-6727-2014
dc.contributor.researcheridA-4924-2011
dc.identifier.eissn14719053
dc.publisher.placeGREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
dcterms.isPartOf.abbreviationPlant Cell Physiol.
dcterms.oaStatusBronze, Green Published
crisitem.author.deptFB 05 - Biologie/Chemie-
crisitem.author.deptidfb05-
crisitem.author.orcid0000-0002-8449-1593-
crisitem.author.parentorgUniversität Osnabrück-
crisitem.author.netidMuKl919-
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