Fluorescence quenching of parallel-stranded DNA bound ethidium bromide: the effect of 7-deaza-2 `-deoxyisoguanosine and 7-halogenated derivatives
| Autor(en): | Li, H Peng, XH Seela, F |
Stichwörter: | 7-deazapurine nucleosides; BASE; Chemistry; Chemistry, Medicinal; Chemistry, Organic; DNA; DUPLEX DNA; ELECTRON-TRANSFER; ethidium bromide; fluorescence quenching; ISOGUANINE; NUCLEIC-ACIDS; NUCLEOBASE; OLIGONUCLEOTIDES; Pharmacology & Pharmacy; RECOGNITION | Erscheinungsdatum: | 2004 | Herausgeber: | PERGAMON-ELSEVIER SCIENCE LTD | Journal: | BIOORGANIC & MEDICINAL CHEMISTRY LETTERS | Volumen: | 14 | Ausgabe: | 24 | Startseite: | 6031 | Seitenende: | 6034 | Zusammenfassung: | Parallel stranded (ps) duplexes were constructed by incorporating 7-deaza-2'-deoxyisoguanosine (1a) or its 7-halogenated analogs 1b,c in place of 2'-deoxyisoguanosine. UV and T-m analyses prove the high affinity of ethidium bromide (EB) to these modified duplexes. Steady-state fluorescence measurement shows that the fluorescence is quenched when EB is bound to ps duplexes containing compounds 1a-c. The quenching effect depends on the 7-substituent of the nucleobase. (C) 2004 Elsevier Ltd. All rights reserved. |
ISSN: | 0960894X | DOI: | 10.1016/j.bmcl.2004.09.071 |
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