2 `-Deoxy-5-propynyluridine: a nucleoside with two conformations in the asymmetric unit

Autor(en): Budow, Simone
Eickmeier, Henning
Reuter, Hans 
Seela, Frank
Stichwörter: Chemistry; Chemistry, Multidisciplinary; CRYSTAL; Crystallography; DNA; MOLECULAR-STRUCTURE; OLIGODEOXYNUCLEOTIDES; PYRIMIDINES; RNA; STABILITY
Erscheinungsdatum: 2009
Herausgeber: WILEY-BLACKWELL
Journal: ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS
Volumen: 65
Ausgabe: 12
Startseite: O645-O648
Zusammenfassung: 
The title compound, 1-(2-deoxy-beta-D-erythro-pentofuranosyl)-5-(prop-1-ynyl)pyrimidin-2,4(1 H,3H)-dione, C(12)H(14)N(2)O(5), shows two conformations in the crystalline state: conformer 1 adopts a C2'-endo (close to (2)E; S-type) sugar pucker and an anti nucleobase orientation [chi = -134.04 (19)degrees], while conformer 2 shows an S sugar pucker (twisted C2'-endo-C3'-exo), which is accompanied by a different anti base orientation [chi = -162.79 (17)degrees]. Both molecules show a sc (gauche, gauche) conformation at the exocyclic C4'-C5' bond and a coplanar orientation of the propynyl group with respect to the pyrimidine ring. The extended structure is a three-dimensional hydrogen- bond network involving intermolecular N-H center dot center dot center dot O and O-H center dot center dot center dot O hydrogen bonds. Only O atoms function as H-atom acceptor sites.
ISSN: 01082701
DOI: 10.1107/S0108270109044850

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