5-Aza-7-deazaguanine-Isoguanine and Guanine-Isoguanine Base Pairs in Watson-Crick DNA: The Impact of Purine Tracts, Clickable Dendritic Side Chains, and Pyrene Adducts
Autor(en): | Zhang, Aigui Kondhare, Dasharath Leonard, Peter Seela, Frank |
Stichwörter: | Chemistry; Chemistry, Multidisciplinary; DNA; molecular recognition; nucleosides; oligonucleotides; purine base pairing; purine– | Erscheinungsdatum: | 2021 | Herausgeber: | WILEY-V C H VERLAG GMBH | Journal: | CHEMISTRY-A EUROPEAN JOURNAL | Volumen: | 27 | Ausgabe: | 26 | Startseite: | 7453 | Seitenende: | 7466 | Zusammenfassung: | The Watson-Crick coding system depends on the molecular recognition of complementary purine and pyrimidine bases. Now, the construction of hybrid DNAs with Watson-Crick and purine-purine base pairs decorated with dendritic side chains was performed. Oligonucleotides with single and multiple incorporations of 5-aza-7-deaza-2 `-deoxyguanosine, its tripropargylamine derivative, and 2 `-deoxyisoguanosine were synthesized. Duplex stability decreased if single modified purine-purine base pairs were inserted, but increased if pyrene residues were introduced by click chemistry. A growing number of consecutive 5-aza-7-deazaguanine-isoguanine base pairs led to strong stepwise duplex stabilization, a phenomenon not observed for the guanine-isoguanine base pair. Spacious residues are well accommodated in the large groove of purine-purine DNA tracts. Changes to the global helical structure monitored by circular dichroism spectroscopy show the impact of functionalization to the global double-helix structure. This study explores new areas of molecular recognition realized by purine base pairs that are complementary in hydrogen bonding, but not in size, relative to canonical pairs. |
ISSN: | 09476539 | DOI: | 10.1002/chem.202005199 |
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geprüft am 23.05.2024